Fig. 3
From: SQANTI-SIM: a simulator of controlled transcript novelty for lrRNA-seq benchmark
Benchmark of isoform identification pipelines. a Distribution of SQANTI3 structural categories and the number of detected true (TP) and false positive (FP) transcripts. b Performance of analysis pipelines in the detection of known and novel simulated transcripts. c Performance based on different types of simulated novelty (ISM, NIC, and NNC). d TP, FN, and FP transcripts for each pipeline and structural category, with and without support from both SJ short-read coverage (min_cov> 1) and TSS with CAGE peak support