Fig. 1From: SQANTI-SIM: a simulator of controlled transcript novelty for lrRNA-seq benchmarkFlowchart of the SQANTI-SIM pipeline. The first three steps simulate reads and accompanying datasets according to the user’s specifications. Simulated data is then used by the transcriptome reconstruction algorithm to predict transcripts. The last SQANTI-SIM module assesses performance by comparison to the simulated ground truth and provides a comprehensive evaluation reportBack to article page