From: Hybrid-hybrid correction of errors in long reads with HERO
Correction | Indels/100 kbp | Mismatches/100 kbp | GF (%) | N/100 kbp | MC (%) |
---|---|---|---|---|---|
Correct Bmock12 ONT reads | |||||
ONT reads | 4001.58 | 2659.11 | 93.63 | 0.00 | 2.33 |
Ratatosk | 31.17 | 94.91 | 93.74 | 0.67 | 2.64 |
R-HERO | 6.45 | 40.48 | 93.78 | 0.20 | 2.57 |
FMLRC | 8.09 | 21.82 | 93.77 | 0.00 | 2.93 |
F-HERO | 5.87 | 20.82 | 93.77 | 0.06 | 2.92 |
LoRDEC | 8.10 | 22.56 | 93.76 | 0.00 | 2.73 |
L-HERO | 5.03 | 20.54 | 93.81 | 0.06 | 2.70 |
Correct Bmock12 PacBio reads | |||||
PacBio reads | 7790.78 | 1851.43 | 87.98 | 0.00 | 7.55 |
Ratatosk | 335.23 | 152.21 | 91.76 | 1.16 | 10.53 |
R-HERO | 59.87 | 58.89 | 92.31 | 0.25 | 12.28 |
FMLRC | 30.39 | 46.53 | 94.84 | 0.00 | 18.14 |
F-HERO | 20.76 | 42.45 | 94.88 | 0.03 | 18.55 |
LoRDEC | 40.99 | 60.44 | 93.00 | 0.00 | 15.32 |
L-HERO | 18.95 | 53.01 | 93.51 | 0.04 | 17.09 |
Correct NWC ONT reads | |||||
ONT reads | 7991.02 | 5476.30 | 100.00 | 0.00 | 7.18 |
Ratatosk | 433.92 | 589.11 | 99.99 | 22.42 | 7.22 |
R-HERO | 198.49 | 426.52 | 100.00 | 13.25 | 7.49 |
FMLRC | 225.39 | 340.97 | 99.99 | 0.00 | 10.35 |
F-HERO | 97.17 | 270.36 | 99.99 | 0.00 | 10.70 |
LoRDEC | 154.4 | 489.82 | 99.99 | 0.00 | 7.18 |
L-HERO | 72.05 | 377.92 | 99.99 | 0.00 | 9.65 |
Correct NWC PacBio reads | |||||
PacBio reads | 11479.15 | 5270.85 | 81.61 | 0.00 | 7.54 |
Ratatosk | 369.40 | 446.14 | 83.13 | 13.65 | 6.12 |
R-HERO | 190.04 | 301.22 | 83.45 | 8.66 | 5.58 |
FMLRC | 244.74 | 239.31 | 84.62 | 0.00 | 5.14 |
F-HERO | 108.63 | 171.05 | 84.49 | 0.00 | 5.01 |
LoRDEC | 79.42 | 422.12 | 83.19 | 0.00 | 5.01 |
L-HERO | 54.68 | 373.06 | 83.00 | 0.00 | 4.76 |