Table 1 Statistics of assembled genomes of P. cordatum and other dinoflagellates
From: Multi-omics analysis reveals the molecular response to heat stress in a “red tide” dinoflagellate
Species | Prorocentrum cordatum | Amphidinium gibbosuma | Polarella glacialis | Symbiodinium natans | Durusdinium trenchii | Cladocopium proliferum | Amoebophrya ceratii |
|---|---|---|---|---|---|---|---|
Isolate | CCMP1329 | Not defined | CCMP1383 | CCMP2548 | CCMP2556 | SCF055; formerly C. goreaui [53] | AT5.2 |
Reference | This study | Beedessee et al. [23] | Stephens et al. [39] | González-Pech et al. [21] | Dougan et al. [40] | Chen et al. [41] | John et al. [42] |
Assembly size (Gbp) | 4.15 | 7.55 | 2.99 | 0.76 | 1.71 | 1.17 | 0.09 |
Estimated genome size based on k-mers (Gbp) | 4.75 | 6.30 | 1.48 | 0.74 | 1.05 | 1.30 | 0.12 |
Number of scaffolds | 22,724 | 4,221,750 | 33,494 | 2,855 | 29,137 | 6,843 | 2,351 |
Genome scaffolds N50 (kbp) | 349.2 | 150.4 | 170.3 | 610.5 | 774.3 | 353.9 | 84.0 |
Maximum scaffold length (Mbp) | 3.56 | 1.36 | 2.17 | 3.40 | 4.57 | 7.38 | 0.54 |
Genome GC-content (%) | 59.7 | 47.1 | 45.9 | 51.8 | 49.8 | 44.4 | 55.9 |
BUSCO proteins recovered (%) [genome mode; alveolata_odb10] | 57.9 | 48.5 | 60.2 | 62.0 | 61.4 | 66.7 | 82.5 |