Table 5 Survey of flowering-related pangenes in a collection of 22 barley genotypes, including the barley20 dataset plus the MorexV3 and BaRTv2 high-quality annotations. Column “Occup” indicates how many annotations contain a gene model, with the number in brackets being the number of matched genomic segments in cases where a gene was absent in some cultivars. Column “Split” tells how many gene models are split in each pangene cluster with respect to the mode gene model. Column “Tand” says how many extra tandem gene models are in each cluster. Column ‘Inv’ states how many genes were found inverted in whole genome alignments

HvCO9

HORVU.MOREX.r3.1HG0058180

22

HvFT3/Ppd-H2

HORVU.MOREX.r3.1HG0077240

19 [2]

1

HvELF3

HORVU.MOREX.r3.1HG0095050

22

8

HvPRR37/Ppd-H1

HORVU.MOREX.r3.2HG0107710

21

1

HvBM3

HORVU.MOREX.r3.2HG0127410

22

HvBM8

HORVU.MOREX.r3.2HG0156870

22

HvCEN

HORVU.MOREX.r3.2HG0166090

21

8

Vrs1

HORVU.MOREX.r3.2HG0184740

22

HvGI

HORVU.MOREX.r3.3HG0238250

22

HvFT2

HORVU.MOREX.r3.3HG0244930

22

HvOS2

HORVU.MOREX.r3.3HG0311160

22

1

HvLUX

HORVU.MOREX.r3.3HG0328340

19 [1]

4

HvGRP7a

HORVU.MOREX.r3.4HG0333810

22

1

PRR59

HORVU.MOREX.r3.4HG0350680

22

20

HvFKF1

HORVU.MOREX.r3.4HG0369880

22

2

HvPRR73

HORVU.MOREX.r3.4HG0385940

22

HvGRP7b

HORVU.MOREX.r3.5HG0421460

20 [1]

1

1

HvELF4-likeA

HORVU.MOREX.r3.5HG0478460

22

HvPRR95

HORVU.MOREX.r3.5HG0498830

22

HvZTL

HORVU.MOREX.r3.6HG0560010

22

HvTOC1

HORVU.MOREX.r3.6HG0595250

21

1

HvCO2

HORVU.MOREX.r3.6HG0611620

22

1

HvFT1

HORVU.MOREX.r3.7HG0653910

22

HvCO1

HORVU.MOREX.r3.7HG0671540

22

1

HvLHY

HORVU.MOREX.r3.7HG0699010

20 [1]

HvZTLa

HORVU.MOREX.r3.7HG0729460

22

2