Table 3 Summary of pangene analyses based on GSAlign whole genome alignments (WGA). N50 values, that describe the length of aligned genomic fragments, are shown as ranges of observed [min, max] values. The percentage of genes in blocks of 3 + contiguous genes and the Average Nucleotide Identities (ANI) are also shown as ranges. Maximum RAM use was measured for pairwise WGA batch jobs
From: GET_PANGENES: calling pangenes from plant genome alignments confirms presence-absence variation
Max RAM (GB) | WGA N50 (Kbp) | % Genes blocks3 + | Total clusters | (Soft) core clusters | % BUSCO complete | % ANI | |
|---|---|---|---|---|---|---|---|
ACK2 | 4.5 | 4.3 | 24.6 | 43,282 | 16,476 | 74.9 | 84.7 |
rice3 | 3.3 | [15.2, 16.9] | [53.0, 57.9] | 62,747 | 18,726 | 84.6 | [96.4, 97.6] |
chr1wheat10 | 83.4 | [40.9, 72.1] | [20.4, 34.3] | 30,005 | 7833 | [98.9, 99.4] | |
barley20 | 113.1 | [17.1, 34.3] | [10.8, 16.2] | 168,880 | 15,567 (23,625) | 61.6 (82.5) | [96.9, 99.3] |