From: Modeling methyl-sensitive transcription factor motifs with an expanded epigenetic alphabet
Modification description | Unmodified motif | Modified motif |
---|---|---|
Full CpG modification to 5mC | \(\overset{\texttt {C}}{\texttt {N}}\texttt{\raisebox{4pt}{G}}\) | m1 |
Full CpG modification to 5hmC | \(\overset{\texttt {C}}{\texttt {N}}\texttt{\raisebox{4pt}{G}}\) | h2 |
Partial CpG modification to 5hmC | \(\overset{\texttt {C}}{\texttt {N}}\texttt{\raisebox{4pt}{G}}\) | \(\overset{\texttt {h}}{\texttt {N}}\texttt{\raisebox{4pt}{2}}\) |
Partial CpG hemi-modification to 5hmC | \(\overset{\texttt {C}}{\texttt {N}}\texttt{\raisebox{4pt}{G}}\) | \(\overset{\texttt {h}}{\texttt {N}}\texttt{\raisebox{4pt}{G}}\) |
Full CpT modification to either 5mC or 5hmC | \(\overset{\texttt {C}}{\texttt {N}}\texttt{\raisebox{4pt}{T}}\) | xT |