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Table 2 Summary of experimental datasets. For each dataset, we list the library description (Library); sequence length in nucleotides (L); number of unique library sequences after holding out experimentally validated variants, if needed (\(M'\)); number of experimentally validated variants (n); \(\%\) of the sequence of interest covered by individual reads (Cover); number of pre-selection reads (\(N^\text {pre}\)); and number of post-selection reads (\(N^\text {post}\)). For the dataset from Huisman et al. [17], the number of reads for each round of selection is presented on a separate row

From: MBE: model-based enrichment estimation and prediction for differential sequencing data

Library

L

M′

n

Cover

\(N^\text {pre}\)

\(N^\text {post}\)

AAV5 insertion [20]

21

8,552,729

5

100

46,049,235

45,306,265

SARS-CoV-2-derived peptide [17]

45

167,841

24

100

44,073

88,032

SARS-CoV-2-derived peptide [17]

45

167,841

24

100

88,032

169,730

SARS-CoV-2-derived peptide [17]

45

167,841

24

100

169,730

235,787

SARS-CoV-2-derived peptide [17]

45

167,841

24

100

235,787

160,863

GB1 double site saturation [12]

168

536,953

11

100

324,434,913

262,112,210

Chorismate mutase homolog [21]

288

3063

11

100

1,228,687

1,929,212

Bgl3 random mutagenesis [23]

1506

468,194

6

100

1,177,842

710,555