Structural variation and introgression from wild populations in East Asian cattle genomes confer adaptation to local environment

Table 2 Candidate genes linked with the “Hainan-Mongolian” differentiated SVs

No. of location (Mongolian_v1)	Type	Length (bp)	Region	F_ST	Gene	Trait
BTA03:18,452,000–18,452,126	Deletion	126	Exon 3	0.77	CRNN	Epidermal differentiation
BTA07:51,555,138–51,556,126	Deletion	988	Exon 1	0.67	SPINK5	Skin barrier
BTA18:19,542,094–19,542,148	Deletion	54	Exons 10–12	0.62	SBSN	Epidermal differentiation;
BTA18:19,542,094–19,542,148	Deletion	54	Exons 10–12	0.62	SBSN	skin barrier
BTA25:26,642,984–26,642,984	Insertion	108	Exon	0.78	SPN	Disease resistance

Note: The locations and lengths of the variations were based on the alignment of the Hainan_v1 and Mongolian_v1 genomes
F_ST, fixation index between the Hainan and Mongolian cattle breeds

ISSN: 1474-760X