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Fig. 3 | Genome Biology

Fig. 3

From: ChromGene: gene-based modeling of epigenomic data

Fig. 3

Brief description of and statistics on each ChromGene annotation. Rows correspond to ChromGene annotations. The columns are as follows: color used for ChromGene annotation; “Mnemonic”—abbreviated name used for annotation; “Description” of each ChromGene annotation based on mark emissions, expression, length, pLI, and other enrichments. Subsequent columns describe summary statistics of ChromGene annotations: “Overall Percentage”, “Median Expression (RPKM)”, and “Median Length (kb)” of genes assigned to annotation; “Percentage of High-pLI Genes (pLI ≥ 0.9)”—percentage of genes assigned to annotation with ≥ 0.9 pLI (probability of Loss of function Intolerance); “Cell Type Specificity”—metric of variability of annotation across cell types; “Housekeeping Gene Enrichment,” “Constitutively Unexpressed Gene Enrichment,” “Constitutive Expressed Gene Enrichment,” “Olfactory Gene Enrichment,” “ZNF Gene Enrichment”—fold enrichment of gene category within annotation compared to “Overall Percentage”

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