Table 3 9 SNPs that were significant with respect to GWAS cutoff 5 × 10−8. ars4796606 is identified by 3 methods
From: COLLAGENE enables privacy-aware federated and collaborative genomic data analysis
Variant | Position | Assigned P-value | Alternate allele frequency | Missing subjects | |||
|---|---|---|---|---|---|---|---|
Plink2 | Secure federated | Plain federated | GMMAT | ||||
rs2075650 | 19:50087459 | 6.43E-52 | 2.72E-56 | 2.64E-56 | 3.96E-56 | 0.2766 | 1 |
rs6859 | 19:50073874 | 1.21E-17 | 5.37E-18 | 5.21E-18 | 5.88E-18 | 0.5102 | 0 |
rs405509 | 19:50100676 | 6.93E-17 | 3.55E-17 | 3.52E-17 | 3.95E-17 | 0.4393 | 0 |
rs8106922 | 19:50093506 | 7.31E-16 | 3.52E-16 | 3.49E-16 | 3.88E-16 | 0.3081 | 1 |
rs157580 | 19:50087106 | 4.48E-14 | 1.94E-14 | 1.90E-14 | 2.09E-14 | 0.702 | 4 |
rs439401 | 19:50106291 | 7.92E-10 | 6.27E-10 | 5.94E-10 | 6.33E-10 | 0.7016 | 0 |
rs10402271 | 19:50021054 | 3.34E-09 | 2.73E-09 | 2.71E-09 | 2.87E-09 | 0.3764 | 0 |
rs3103765 | 8:96460015 | 2.26E-08 | 1.45E-08 | 1.43E-08 | 1.51E-08 | 0.5122 | 0 |
rs4796606a | 17:36917613 | 5.38E-08 | 3.40E-08 | 2.69E-08 | 2.83E-08 | 0.9387 | 0 |