Table 1 Detailed summary of the datasets used for comparing metric performance
Name | Platform | #Cells | #Genes | Cell type | Reference | Accessibility/data source |
|---|---|---|---|---|---|---|
HSC_droplet | 3′-end (10X Droplet) | 486 | 20,138 | Hematopoietic precursor cell | [11] | [18] |
Naive B_droplet | 3′-end (10X Droplet) | 49 | 20,138 | Naïve B cell | ||
HSC_FACS | Full-length (smartseq2) | 1174 | 22,899 | Hematopoietic stem cell | ||
Naive B_FACS | Full-length (smartseq2) | 1166 | 22,899 | Naïve B cell | ||
Immature B_FACS | Full-length (smartseq2) | 44 | 22,899 | Immature B cell | ||
Large B | 3′-end (10X Droplet) | 10,085 | 15,858 | CD19 + B cell | [19] | aSRA: SRP073767 [20] |
Technical data | 3′-end (10X Droplet) | 1015 | 92 | ERCC spike-in | [21] | GEO: GSE54695 [22] |
Simulation1 | Splatter Parameter estimated from full-length (10X Droplet) | 400 | 1000 | Â | [23] | |
Simulation2 | 400 | 1000 | ||||
Simulation3 | 400 | 1000 | ||||
Simulation4 | 400 | 1000 |