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Table 7 Read cloud deconvolution specifically promotes reads to low taxonomic ranks such as genus and species in the MOCK5 LoopSeq dataset. The column “Promotion” indicates the promotion of a paired read i from initial rank X to rank Y as “X\(\rightarrow\)Y” using deconvolved read cloud information. The abbreviations are as follows: root (R), kingdom/domain (D), phylum (P), class (C), order (O), family (F), genus (G), species (S). The columns “Prop. Improvement” are calculated by taking the difference between the number of reads promoted using the enhanced read clouds and the number of reads promoted using the original read clouds, divided by the latter

From: Ariadne: synthetic long read deconvolution using assembly graphs

Dataset

Search distance (bp)

Time (HH:MM)

Memory (GB)

Threads

MOCK5 10x

Assembly

10:16

103

20

MOCK5 10x

5000

00:48

56

20

MOCK5 10x

10000

00:53

56

20

MOCK5 10x

15000

01:16

56

20

MOCK5 10x

20000

00:56

56

20

MOCK5 10x

Reference

18:28

100

20

MOCK5 LoopSeq

Assembly

01:13

22

20

MOCK5 LoopSeq

5000

00:44

40

20

MOCK5 LoopSeq

10000

02:04

40

20

MOCK5 LoopSeq

15000

03:00

41

20

MOCK5 LoopSeq

20000

01:51

41

20

MOCK5 LoopSeq

Reference

03:39

100

20

MOCK20 10x

Assembly

06:39

58

20

MOCK20 10x

5000

00:44

54

20

MOCK20 10x

10000

01:09

54

20

MOCK20 10x

15000

01:57

54

20

MOCK20 10x

20000

02:38

54

20

MOCK20 10x

Reference

15:07

100

20

MOCK20 TELL-Seq

Assembly

04:09

57

20

MOCK20 TELL-Seq

5000

01:53

56

20

MOCK20 TELL-Seq

10000

03:47

56

20

MOCK20 TELL-Seq

15000

08:57

56

20

MOCK20 TELL-Seq

20000

11:44

57

20

MOCK20 TELL-Seq

Reference

14:36

100

20