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Fig. 1 | Genome Biology

Fig. 1

From: Full-length autonomous transposable elements are preferentially targeted by expression-dependent forms of RNA-directed DNA methylation

Fig. 1

Meta-plots of CHH methylation levels in TE-silent and TE-active contexts. a Average CHH methylation percentage across all DMRs identified in the TE-silent (top) or ddm1 TE-active (bottom) contexts. b Analysis of DMRs longer than 2 kb. c Alignment of all genes by their 5′ start and 3′ stop codons. d Alignment of all TEs by their 5′ and 3′ annotated boundaries. Orientation of the TE was determined using the TAIR10 TE annotation. e Alignment of all TEs longer than 2 kb. f Alignment of the transcriptionally competent subset of 2374 TEs. g Alignment of the transcriptionally competent TEs longer than 2 kb. Solid lines represent the 100 bp binned average CHH methylation percentages. The variation of individual element data points is represented as the transparent colored region around the solid lines (95 % confidence interval of the average)

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Genome Biology

ISSN: 1474-760X

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