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Fig. 6 | Genome Biology

Fig. 6

From: HSA: integrating multi-track Hi-C data for genome-scale reconstruction of 3D chromatin structure

Fig. 6

Average PCC between the input contact maps and the power-law transformed distances at 1-Mb resolution for different methods across four cell lines. a Comparison of HSA and BACH on the raw contact maps in mESC. b Comparison of HSA, ChromSDE and ShRec3D on the normalized contact maps in mESC. c Comparison of HSA and BACH on the raw contact maps in GM06990. d Comparison of HSA, ChromSDE and ShRec3D on the normalized contact maps in GM06990. e Comparison of HSA and BACH on the raw contact maps in K562. f Comparison of HSA, ChromSDE and ShRec3D on the normalized contact maps in K562. g Comparison of HSA and BACH on the raw contact maps in MCF7. h Comparison of HSA, ChromSDE and ShRec3D on the normalized contact maps in MCF7. The error bars are standard deviations. HSA-multi HSA using multiple raw contact maps as the input, HSA-multinorm/singlenorm HSA using multiple normalized contact maps/a single normalized contact map as the input, HSA-single HSA using a single raw contact map as the input, PCC Pearson correlation coefficient

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