| Whole genome | Scaffolds only |
---|---|---|
Assembly | ||
Total length | 549,604,264 | 494,957,111 |
Number of scaffolds/contigs | 68,379 | 9,047 |
N50(size/number) | 433,759 / 324 | 526,483 / 267 |
N90(size/number) | 2,023 / 8,894 | 35,958 / 1,484 |
Range (min-max) | 500-3,177,954 | 2,000-3,177,954 |
% of Ns | 34.96Â % | 36.99Â % |
G + C content | 38.43 % | 36.64 % |
Annotation | ||
Number of protein coding (PC) genes | 30,491 | 29,569 |
Number of PC transcripts | 66,634 | 65,685 |
Number of small RNAs | 2,529 | 2,271 |
Number of long non-coding genes | 1,033 | 870 |
G + C content exonic (for PC genes) | 47.57 % | 47.70 % |
Number of functionally annotated transcripts | 62,713 (94.12Â %) | 62,594 (95.2Â %) |