Fig. 4

Epigenetic analyses of terminal repeat retrotransposons in miniature (TRIMs) in Glycine max and Zea mays. a Methylation patterns of TRIMs based on insertion position. Red: CG methylation, blue: CHG methylation, green: CHH methylation. b Example of TRIMs that were highly methylated and targeted by 24-nucleotide small interfering RNA. c Example of TRIMs that were highly methylated at only the CG context and not targeted by 24-nucleotidet small interfering RNA. d Methylation patterns of TRIM-related genes (TRGs) and non-TRIM related genes (NTRGs). TSS transcription start site, TTS transcription termination site