Table 5 Methylation data sources
From: Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data
Dataset | Cell type | Number, n | Platform | Accession number | Reference |
|---|---|---|---|---|---|
450 k-fibroblast | Fibroblast (skin) | 62 | 450k | [GEO:GSE52025] | [19] |
450 k-EBV | LCL (EBV) | 288 | 450k | [GEO:GSE36369] | [17] |
450 k-blood | Whole blood | 305 | 450k | [GEO:GSE54882] | [24] |
27 k-EBV Vancouver | LCL (EBV) | 180 | 27k | [GEO:GSE27146] | [36] |
27 k-EBV London | LCL (EBV) | 77 | 27k | [GEO:GSE26133] | [37] |
450 k-PRAD-normal | Prostate (normal) | 49 | 450 k | TCGA | [14] |
450 k-PRAD-cancer | Prostate (cancer) | 340 | 450 k | TCGA | [14] |
PMDs-IMR90 | Fibroblast (lung) | 1 | MethylC-Seq | Salk Institute | [40] |
EBV hypomethylation blocks | LCL (EBV) | 1 | WGBS | [GEO:GSE49629] | [23] |