Figure 5

Integration of transcriptional profiling and binding site data. (A) GO term enrichment analysis of high-confidence targets that were found only when both TFs are present (labelled FLC:SVP complex) or that were independent of complex formation (labelled FLC or SVP single). (B) Local enrichment of SVP:GFP and FLC binding in four different regulatory regions. AP3 and SHP2 are complex-independent, while SPL15 and AGL16 are bound in a complex-dependent manner. Bar represents a 5 kb window. (C,D) Proportion of direct targets of SVP:GFP (C) and FLC (D) among genes identified as up- or down-regulated in the svp-41, flc-3 and svp-41 flc-3 in the whole set (left) or divided between apices (middle) and leaves tissue samples (right).