Table 1 Genomic features used in OPEN
From: Prioritizing causal disease genes using unbiased genomic features
Data type | Data source | Number of features |
|---|---|---|
Differential mRNA expression | GEO - human | 15,778 |
Differential mRNA expression | GEO - mouse | 4,780 |
Tissue mRNA expression - percentile | Novartis Tissue Atlas | 158 |
Tissue mRNA expression - percentile | Neurocrine Tissue Atlas | 2,031 |
Tissue mRNA expression - comparison | Neurocrine Tissue Atlas | 141 |
mRNA expression clusters | Liver | 148 |
mRNA expression clusters | Multi-tissue | 108 |
Protein domain organization | Interpro | 12,624 |
Predicted conserved TFBS | Vista | 2,336 |
Chip-Seq | Encode/GEO | 2,073 |
Predicted TFBS | PWM (Jasper/Transfac/Uniprobe) | 12,624 |
Predicted conserved TFBS | Vista | 2,336 |
miRNA predicted binding sites | TargetScan | 153 |
Phylogenetic profiles | Ensembl | 49 |