Figure 4

K-mer coverage in the three assemblies across the Sub1A gene. In each panel, the k-mer coverage of the sequence reads of the three respective genomes are plotted according to the sequence of the Sub1A A-2 allele. Only IR64 has consistent coverage across the gene, while the other two genomes have sparse coverage of a few repetitive k-mer sequences. For clarity, the k-mer coverage range 1× to 50,000× (log scale) is displayed in all the plots.