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Table 4 rdd -downregulated stress response genes are enriched for promoter TE sequences

From: DNA demethylases target promoter transposable elements to positively regulate stress responsive genes in Arabidopsis

 

Total genes surveyed (n)

Genes with promoter TE (n)

Genes with 3' TE (n)

Genes with gene body TE (n)

All Stress response genes from MapMan analysis

99

45 (45.4%)

15 (15.2%)

3 (3.0%)

≥4-fold downregulated stress response genes

24

16 (66.7%)

1 (4.2%)

1 (4.2%)

2-4-fold downregulated stress response genes

75

29 (38.7%)

14 (18.7%)

2 (2.7%)

Random gene set 1

77

23 (29.9%)

10 (13.0%)

1 (1.3%)

Random gene set 2

130

42 (32.3%)

11 (8.5%)

2 (1.5%)