Table 1 Characteristics of the loblolly pine v1.01 draft assembly

Number of chromosomes

12

G + C%

38.2%

Sequence in contigs >64 bp

20,148,103,497 bp

Total span of scaffolds

23,180,477,227 bp

Contig N50

8,206 bp

Scaffold N50

66,920 bp

Haploid paired end libraries 200-600 bp

11 libraries

7.5x billion x 2 reads (GA2x + HiSeq + MiSeq)

1.4 trillion bp total read length

63x sequence coverage

150 million maximal super-reads

52 billion total bp

2.4x sequence coverage

Diploid mate pair libraries 1,000-5,500 bp

48 libraries

863 million x 2 reads (GA2x)

273 billion total read length

270 million x 2 reads after filtering

37x physical coverage

DiTag libraries 35-40 Kbp

9 libraries

46 million x 2 reads (GA2x)

4.5 million reads x 2 after filtering

7.5x physical coverage