Table 1 Selected top categories enriched in genes containing editing sites near an edited Alu
From: Alu elements shape the primate transcriptome by cis-regulation of RNA editing
Category | Term | Count | Percentagea | Pvalue | Fold enrichment | Benjaminib | False discovery rate |
|---|---|---|---|---|---|---|---|
KEGG_PATHWAY | hsa04142; lysosome | 7 | 2.9 | 9.32 × 10-9 | 46.1 | 8.02 × 10-7 | 1.01 × 10-5 |
PFAM | PF01352; KRAB box (Krueppel-associated box) | 15 | 6.2 | 9.97 × 10-13 | 16.0 | 4.71 × 10-10 | 1.42 × 10-9 |
PANTHER_FAMILY | PTHR23224; zinc finger proteins | 17 | 6.9 | 1.94 × 10-9 | 7.3 | 3.57 × 10-7 | 2.40 × 10-6 |
INTERPRO | IPR013087; zinc finger, C2H2-type/integrase, DNA-binding | 17 | 6.9 | 3.22 × 10-8 | 6.0 | 7.15 × 10-6 | 4.56 × 10-5 |
SP_PIR_KEYWORDS | Alternative splicing | 111 | 45.3 | 5.35 × 10-31 | 3.1 | 7.24 × 10-29 | 7.03 × 10-28 |
GOTERM_BP_ALL | GO:0045449; regulation of transcription | 43 | 17.5 | 8.91 × 10-7 | 2.2 | 5.22 × 10-4 | 0.0014 |