Table 1 Over–represented Gene Ontology (GO) terms of top 1,000 intron retention (IR) genes regulated by red and blue light

MF: structural constituent of ribosome

3.95E–29

CC: ribosome

9.50E–25

BP: translation

1.22E–22

CC: integral to membrane

1.19E–06

BP: cell redox homeostasis

1.96E–06

CC: mitochondrion

8.95E–05

MF: glycerone kinase activity

9.31E–05

A total of 1,000 genes were submitted to the GOBU functional enrichment tool, which resulted in 689 unique genes with annotations. Terms are ranked by P value of over–representation and are included in list if P<1E–04.

BP: Biological process; CC: Cellular component; MF: Molecular function.

GO term

P value

CC: chloroplast

4.67E–33

MF: structural constituent of ribosome

1.66E–29

CC: ribosome

5.14E–27

BP: translation

1.63E–20

BP: reductive pentose–phosphate cycle

1.47E–16

CC: photosystem II

2.36E–10

BP: photosynthesis, light harvesting

6.62E–10

CC: photosystem I

8.56E–10

CC: stromule

2.32E–09

MF: chlorophyll binding

2.53E–08

CC: thylakoid

6.47E–08

BP: photorespiration

1.00E–07

CC: chloroplast envelope

1.12E–07

BP: photosynthesis

3.92E–07

CC: oxygen evolving complex

5.16E–07

CC: cytosolic ribosome

3.22E–06

MF: rRNA binding

1.68E–05

BP: cell redox homeostasis

2.21E–05

BP: translational elongation

2.26E–05

MF: ribulose–bisphosphate carboxylase activity

2.86E–05

BP: nitrate assimilation

5.10E–05

MF: glycerone kinase activity

7.63E–05