Table 4 Summary of the high-throughput sequencing data available for sugarcane, Sorghum and Miscanthus
From: Biofuel and energy crops: high-yield Saccharinae take center stage in the post-genomics era
Platform | Record GEO/NCBI, SRA | No. of samples | Sample description | Variety | Reference |
|---|---|---|---|---|---|
Illumina Genome Analyzer IIx | GPL16316 | 8 | sRNA and non-coding RNAs of sugarcane in response to drought stress | Saccharum hybrid (mixed) | [92] |
Illumina Genome Analyzer IIx | GPL15137 | 3 | Examination of small RNAs in the sugarcane leaves that match to sugarcane LTR-RTs | Saccharum hybrid cv. SP80-3280 | [93] |
| Â | Â | Â | Identification of small RNAs associated with auxiliary bud outgrowth | Saccharum hybrid cv. SP80-3280 | [121] |
Illumina Genome Analyzer IIx | GPL16317 | 6 | Screening of small RNA transcriptome of sugarcane plants infected with Acidovorax avenae subsp. avenae after 7 days | Saccharum hybrid cv. SP70-1143 | [92] |
| Â | Â | Â | Identification of sugarcane microRNAs after exposure to pathogens and microorganisms | Saccharum hybrid cv. SP70-1143 | Â |
SOLEXA technology | Not available | 8 | Identification of microRNA differentially expressed under drought stress, correlation between two cultivars with different drought tolerance | Saccharum hybrid cv. RB867515, RB855536 | [90] |
SOLEXA technology | Not available | 2 | Increase the understanding of the role of microRNAs in the complex regulation of drought stress in field-grown sugarcane | Saccharum hybrid cv. RB867515, RB855536 | [91] |
Illumina Genome Analyzer II | GPL13779 | 24 | RNA-Seq of Sorghum bicolor 9-day seedlings in response to osmotic stress and abscisic acid | Sorghum bicolor | [75] |
Illumina Genome Analyzer IIx | GPL14633 | 3 | Comparative sequence analysis of plant small RNAs | S. bicolor | GEO |
| Â | Â | Â | Comparative sequence analysis of plant small RNAs from leaves, flowers and panicle tissues | S. bicolor | GEO |
Illumina Genome Analyzer II | GPL9983 | 3 | Develop sequence resources of small RNAs from different Miscanthus × giganteus tissues (including leaves, flowers and rhizomes) | Miscanthus × giganteus | [94] |
Illumina Genome Analyzer II | SRX131848/SRX131845 | 1 | RNAseq from two Miscanthus sinensis to define single nucleotide variants and find simple sequence repeat markers for understanding genomic responses to tetraploidy and chromosome fusion | Miscanthus sinensis | [96] |