|  |  |  |  | Relative coverage | |||||
---|---|---|---|---|---|---|---|---|---|---|
Data set | Â | Â | Â | Â | GC extremes | Special motifs | ||||
Sample | # | Library method | Sequencing platform | Coverage (x) | GC ≤ 10% | GC ≥ 75% | GC ≥ 85% | (AT)15 | G|C ≥ 80% | Bad promoters |
P. falciparum | 1 | Fisher et al.a with Kapa reagents | Illumina MiSeq | 150 | 0.58 | - | - | 0.43 | - | - |
3D7 | 2 | Ion Torrent standard | Ion Torrent PGM | 103 | 0.39 | - | - | 0.11 | - | - |
 | 3 | Pacific Biosciences standard | Pacific Biosciences RS | 104 | 0.89 | - | - | 0.85 | - | - |
E. coli | 4 | Fisher et al.a with Kapa reagents | Illumina MiSeq | 380 | - | 0.82 | - | - | - | - |
K12 MG1655 | 5 | Ion Torrent standard | Ion Torrent PGM | 311 | - | 0.31 | - | - | - | - |
 | 6 | Pacific Biosciences standard | Pacific Biosciences RS | 115 | - | 0.97 | - | - | - | - |
R. sphaeroides | 7 | Fisher et al.a with Kapa reagents | Illumina MiSeq | 388 | - | 0.94 | 0.60 | - | - | - |
2.4.1 | 8 | Ion Torrent standard | Ion Torrent PGM | 302 | - | 0.39 | 0.10 | - | - | - |
 | 9 | Pacific Biosciences standard | Pacific Biosciences RS | 142 | - | 0.97 | 0.87 | - | - | - |
Human | 10 | Aird et al. with Phusion | Illumina HiSeq v2 | 028 | 0.58 | 0.27 | 0.071 | 0.38 | 0.19 | 0.027 |
NA12878 | 11 | Aird et al. with Phusion+betaine | Illumina HiSeq v2 | 048 | 0.44 | 0.44 | 0.28 | 0.26 | 0.20 | 0.14 |
 | 12 | Aird et al. with AccuPrime | Illumina HiSeq v2 | 075 | 0.42 | 0.42 | 0.23 | 0.23 | 0.38 | 0.16 |
 | 13 | Fisher et al.a | Illumina HiSeq v3 | 070 | 0.29 | 1.1 | 0.56 | 0.23 | 0.44 | 0.39 |
 | 14 | Fisher et al.a with Kapa reagents | Illumina HiSeq v3 | 120 | 0.41 | 0.88 | 0.48 | 0.25 | 0.65 | 0.36 |
 | 14' | Fisher et al.a with Kapa reagents | Illumina HiSeq v3 | 000.5 | 0.41 ± 0.0032 | 0.88 ± 0.0047 | 0.48 ± 0.0067 | 0.25 ± 0.0042 | 0.65 ± 0.012 | 0.37 ± 0.022 |
 | 15 | Ion Torrent standard | Ion Torrent PGM | 001.1 | 0.27 | 0.36 | 0.068 | 0.19 | 0.26 | 0.046 |
 | 16 | Complete Genomics standard | Complete Genomics | 079 | 0.24 | 0.53 | 0.18 | 0.28 | 0.61 | 0.092 |