Table 1 Analysis of the epigenetic landscape

From: Characterization of chromosomal architecture in Arabidopsisby chromosome conformation capture

Genomic feature	P-value^a
Genomic feature	Permutation test	GSEA-like test
H3	0.1013	0.0779
H3K18ac^b	0.0335	0.0178
H3K27me1^b	0.0249	0.0084
H3K27me3	0.3355	0.099
H3K36me2^b	0.0033	0.0051
H3K36me3^b	0.0033	0.0054
H3K4me2^b	0.0033	0.0051
H3K4me3^b	0.0037	0.0051
H3K9ac^b	0.0033	0.0051
H3K9me2^b	0.0325	0.0057
Transcription^b	0.0033	0.0054
CG methylation replicate 1^b	0.0065	0.0054
CHG methylation replicate 1^b	0.0083	0.0051
CHH methylation replicate 1^b	0.0083	0.0051
CG methylation replicate 2^b	0.0083	0.0054
CHG methylation replicate 2^b	0.0087	0.0051
CHH methylation replcate 2^b	0.0083	0.0051
Genomic DNA	0.0871	0.056

^aTable contains adjusted P-values (false discovery rate; FDR (Benjamini-Hochberg)) for genomic features tested with a permutation test or a Gene Set Enrichment Analysis (GSEA)-like algorithm.
^bGenomic features differing significantly between prey and control regions (α = 0.05).

Back to article page

ISSN: 1474-760X

Contact us

Submission enquiries: editorial@genomebiology.com
General enquiries: info@biomedcentral.com