From: MetAMOS: a modular and open source metagenomic assembly and analysis pipeline
 |  |  | Class level (pre-propagate) | Class level (post-propagate) | ||||
---|---|---|---|---|---|---|---|---|
Dataset | Assembler | Run time (speedup) | Number unclassified | Number correctly classified | Number incorrectly classified | Number unclassified | Number correctly classified | Number incorrectly classified |
mockE | None | 84.2 h (-) | 11,116,265 | 3,920,471 | 681,801 | NA | NA | NA |
mockE | SOAPdenovo_MA | 33.0 h (2.6×) | 634,091 | 14,852,561 | 231,885 | 612,517 | 14,874,157 | 231,863 |
mockE | Velvet_MA | 29.4 h (2.9×) | 870,073 | 14,611,333 | 237,130 | 854,554 | 14,626,870 | 237,112 |
mockE | MetaVelvet_MA | 29.9 h (2.8×) | 709,938 | 14,800,318 | 208,281 | 693,142 | 14,811,333 | 214,062 |
mockE | MetaIDBA_MA | 37.8 h (2.2×) | 1,700,699 | 13,652,114 | 365,724 | 1,676,319 | 13,676,524 | 365,724 |
mockS | None | 167.1 h (-) | 18,081,508 | 5,200,170 | 849,672 | NA | NA | NA |
mockS | SOAPdenovo_MA | 72.3 h (2.3×) | 1,971,900 | 21,772,125 | 387,325 | 1,850,541 | 21,884,121 | 386,688 |
mockS | Velvet_MA | 71.8 h (2.3×) | 2,392,898 | 21,313,998 | 424,454 | 2,250,852 | 21,456,487 | 424,011 |
mockS | MetaVelvet_MA | 54.4 h (3.1×) | 2,301,985 | 21,449,129 | 380,236 | 2,134,599 | 21,614,171 | 382,580 |
mockS | MetaIDBA_MA | 53.8 h (3.1×) | 2,576,941 | 21,316,513 | 237,896 | 2,210,972 | 21,681,036 | 239,342 |