From: Apple miRNAs and tasiRNAs with novel regulatory networks
 |  |  |  |  | Match |  | Normalized reads | ||||
---|---|---|---|---|---|---|---|---|---|---|---|
Name | miRNA sequence | Contigb | Len | Str | position | miRNA* sequencec | Leaf | Root | Flower | Fruit | Total |
miRC1 | ACAGGGAAGAGGTAGAGCATG | MDC006505.260 | 21 | - | 3,797 | ATGCACTGCCTCTTCCCTGGC | 1,091 | 23,246 | 0 | 12 | 24,349 |
miRC2 | ACCTAGCTCTGATACCATGAA | MDC018599.370 | 21 | + | 9,369 | TGTGGTATCAGGACTATGTTA | 893 | 261 | 5,364 | 1,823 | 8,341 |
miRC3 | CTACCGATGCCACTAAGTCCCA | MDC017130.228 | 22 | + | 6,809 | GGACTTAGTAGCTCGGTGA | 266 | 247 | 1,567 | 671 | 2,751 |
miRC4 | TGTTATATTGTCAGATTGTCA | MDC019554.272 | 21 | - | 10,154 | ACAGTCTGACAATATAACGTG | 1,035 | 502 | 6 | 0 | 1,543 |
miRC5 | AATGGAAGGGTAGGAAAGAAG | MDC006350.123 | 21 | - | 2,997 | TCTTTCCTATCCCTCCCATTCC | 1,021 | 324 | 144 | 0 | 1,490 |
miRC6a | TCCTCTTGGTGATCGCCCTGT | MDC009272.709 | 21 | - | 4,184 | AGGGTGATTAACAAAGGGATG | 359 | 279 | 336 | 319 | 1,294 |
miRC6b | TCCTCTTGGTGATCGCCCTGC | MDC006081.961 | 21 | - | 466 | AGGGTGGTTACCAATGGGATG | 122 | 218 | 0 | 46 | 385 |
miRC7 | TTATACAGAGAAATCACGGTCG | MDC009778.59 | 22 | - | 4,735 | ACCGTGTTTTTCTGTATAAAG | 511 | 624 | 108 | 27 | 1,270 |
miRC8 | AAGAGCGGGATGTGTAAAAGG | MDC001018.301 | 21 | + | 2,490 | CTTTTACCTATCCCATTCTGT | 248 | 0 | 0 | 0 | 248 |
miRC9 | TCTGTCGTGGGTGAGATGGTGC | MDC011178.406 | 22 | - | 16,699 | TTCATCTCTCCTCGACAGAAG | 137 | 90 | 0 | 4 | 231 |
miRC10 | GAATTCCTTCTCCTCTCCTTT | MDC026449.10 | 21 | - | 340 | AGGAGGGAGAGAGGGTTTTAC | 0 | 0 | 166 | 7 | 173 |
miRC11 | CACCAATATCAACTTTATTTG | MDC005581.168 | 21 | + | 2,657 | AATAAAGTTGATATTGGTGTG | 6 | 12 | 44 | 38 | 100 |
miRC12 | TCTGTCGAAGGTGAGATGGTGC | MDC003092.251 | 22 | + | 8,878 | TTCATCCCTCCTCGACTGAAG | 10 | 64 | 0 | 0 | 73 |
miRC13 | ATCCAACGAAGCAGGAGCTGA | MDC009318.175 | 21 | + | 3,804 | AGCTGCTGACTCGTTGGTTCA | 0 | 0 | 18 | 42 | 60 |
miRC14 | CGAACTTATTGCAACTAGCTT | MDC008558.180 | 21 | + | 6,507 | CAAGCTAGTTGTAATAAGTTC | 24 | 0 | 13 | 0 | 38 |
miRC15 | AAAGTATCAAGGAGCGCAAAG | MDC014075.204 | 21 | - | 26,060 | TTGCGTTCCACTGATTCTTTCG | 8 | 8 | 9 | 2 | 27 |
miRC16 | CATCTGGGTCGTTCAAATTTA | MDC009589.307 | 21 | - | 1,975 | AATTTGAACGGCCCAGATGGG | 10 | 12 | 0 | 0 | 22 |
miRC17 | ATCATGCGATCCCTTCGGACG | MDC005391.194 | 21 | + | 11,429 | TCCAAAGGGATCGCATTGATCT | 11 | 0 | 0 | 0 | 11 |
miRC18 | ATACTCATCGAATTTGTCATA | MDC012422.128 | 21 | + | 849 | TGACAAATTGGATGAGTATTC | 3 | 0 | 4 | 0 | 8 |
miRC19 | TGGGATGTTGGTATGGTTCAA | MDC016463.170 | 21 | - | 5,187 | GAGCCGTGCCAATATCACAGT | 0 | 7 | 0 | 0 | 7 |
miRC20 | TGAAGAGAAGAGCGTTGTTTGG | MDC001494.456 | 22 | - | 33,010 | TGACAGCCTCTTCTTCTCATG | 6 | 0 | 0 | 0 | 6 |
miRC21 | ATCATTAACACTTAATAACGA | MDC006081.432 | 21 | + | 219 | TTATTAAGTGTTAATGATTGG | 0 | 0 | 0 | 2 | 2 |
miRC22 | CCATATGTCCCTCCATATACT | MDC016302.308 | 21 | + | 5,368 | No star found | 0 | 0 | 72 | 8 | 80 |
miRC23 | AATGATGATCAAACAACCCTT | MDC020884.221 | 21 | + | 4,086 | No star found | 0 | 0 | 46 | 2 | 48 |
miRC24 | TGAACTTGGCTGAATGTGGACT | MDC001394.253 | 22 | - | 378 | No star found | 22 | 19 | 0 | 0 | 40 |
miRC25 | TTTCGGAACCACTTACACCCA | MDC017130.228 | 21 | + | 9,764 | No star found | 0 | 0 | 24 | 0 | 24 |
miRC26 | TCCCCAAAACCCCTCATTCCAA | MDC017130.228 | 22 | + | 9,967 | No star found | 0 | 0 | 15 | 0 | 15 |
miRC27 | TTGCCAAAGGAGATCTGCTCAG | MDC019485.283 | 22 | - | 7,997 | No star found | 6 | 0 | 0 | 6 | 12 |
miRC28 | TGCATTTGCACCTGCACTTGT | MDC007946.169 | 21 | - | 672 | No star found | 0 | 0 | 9 | 3 | 11 |
miRC29 | CAAAGCTTTTAATATCAGTCGA | MDC018873.313 | 22 | - | 10,447 | No star found | 0 | 0 | 5 | 6 | 10 |
miRC30 | TCCCTCAAGGGCTTCCAATATT | MDC004268.215 | 22 | + | 9,006 | No star found | 0 | 0 | 0 | 10 | 10 |
miRC31 | TCCATAATTTTTCCAGATCAA | MDC005072.383 | 21 | + | 9,885 | No star found | 0 | 0 | 8 | 0 | 8 |
miRC32 | TGGTTTGGTTGGAAAACGGCT | MDC006935.286 | 21 | - | 27,531 | No star found | 0 | 7 | 0 | 0 | 7 |
miRC33 | AATTAGGCTGGCATTAGACAA | MDC009589.310 | 21 | + | 3,312 | No star found | 6 | 0 | 0 | 0 | 6 |
miRC34 | TGGTGATAGGATAGTTGGAAG | MDC010150.221 | 21 | - | 29,453 | No star found | 6 | 0 | 0 | 0 | 6 |
miRC35 | TACTGTTATAATGGCATTCCC | MDC001086.52 | 21 | + | 12,332 | No star found | 5 | 0 | 0 | 0 | 5 |
miRC36 | CTCAATTTGAACGCGTGGCTA | MDC015454.116 | 21 | + | 3,773 | No star found | 0 | 5 | 0 | 0 | 5 |
miRC37 | TGGCCTTGGTGGAAGAGATCC | MDC000614.265 | 21 | - | 5,670 | No star found | 0 | 4 | 0 | 0 | 4 |
miRC38 | TGGGCCTGGTCAGGAGGATCC | MDC018501.179 | 21 | - | 2,535 | No star found | 0 | 4 | 0 | 0 | 4 |
miRC39 | TTAAATACAAGCAGGAGCTCT | MDC011810.169 | 21 | + | 42,284 | No star found | 0 | 3 | 0 | 0 | 3 |
miRC40 | CACCTGGGACTTGCAGCCATG | MDC009540.166 | 21 | + | 1,015 | No star found | 3 | 0 | 0 | 0 | 3 |
miRC41 | CATCCGAATTACCAATAACTG | MDC009746.72 | 21 | + | 18,725 | No star found | 0 | 0 | 3 | 0 | 3 |
miRC42 | ATAGATGGAAGCTACCAACCC | MDC013676.252 | 21 | + | 6,707 | No star found | 0 | 0 | 0 | 3 | 3 |