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Table 3 Training and base calling time for Ibis and AYB.

From: All Your Base: a fast and accurate probabilistic approach to base calling

  

Ibis

 

AYB

 
 

Training

Base calling

Total

Base calling

Δ%

Ï•X174 L2

68

2

70

12

-83

Ï•X174 L4

121

4

125

21

-83

Ï•X174 L6

114

3

117

15

-87

Ibis Test

6

4

10

1

-90

B. pert./1

21

13

34

119

+250

B. pert./2

33

21

54

163

+202

BGI/1

126

17

143

96

-32

BGI/2

117

29

146

96

-34

Illumina/1

136

27

163

196

+20

Illumina/2

136

41

177

197

+11

HiSeq/1

94

34

128

276

+116

HiSeq/2

†

  

274

 
  1. AYB does not require training, so only base calling time is reported. The Δ% figure for AYB is the percentage difference compared to the Ibis total time. All times are the real time, in minutes, running on four cores of an Intel Xeon L5420 running at 2.5 GHz. †Ibis failed to train on the second end of the HiSeq data so no time is reported.
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Genome Biology

ISSN: 1474-760X

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