| Sample ID | ||
---|---|---|---|
 | Tumor | Cell line | Normal |
Raw reads | 187,023,594 | 119,030,552 | 190,772,020 |
Unalignable reads | 14,717,058 | 3,778,934 | 14,190,612 |
Aligned reads | 172,306,536 | 115,251,618 | 176,581,408 |
Percentage alignable | 92.13% | 96.83% | 92.56% |
Reads passing filter | 129,919,859 | 92,512,679 | 137,134,828 |
Percentage remaining after filter | 69.47% | 77.72% | 71.88% |
Number of PCR duplicates | 8,498,978 | 15,903,654 | 6,070,718 |
Percentage PCR duplicates | 6.54% | 17.19% | 4.43% |
Reads within exome | 80,042,870 | 49,312,008 | 80,869,734 |
Percentage reads overall in exome | 61.61% | 53.30% | 58.97% |
Percentage exome covered at 1× | 97.10% | 96.80% | 97.00% |
Percentage exome covered at 20× | 86.80% | 82.40% | 86.30% |