Volume 11 Supplement 1

Beyond the Genome: The true gene count, human evolution and disease genomics

Open Access

Diverse somatic mutation patterns and pathway alterations in human cancers

  • Zhengyan Kan1, 2,
  • Bijay S Jaiswal1 and
  • Somasekar Seshagiri1
Genome Biology201011(Suppl 1):P37

DOI: 10.1186/gb-2010-11-s1-p37

Published: 11 October 2010

Systematic characterization of somatic mutations in cancer genomes is essential for understanding the disease and developing targeted therapeutics [1]. Here we report the identification of 2576 somatic mutations across ~1,800 Mb of DNA, representing 1507 coding genes from 441 tumors, consisting of breast, lung, ovarian and prostate cancer types and subtypes. We found that mutation rates and the sets of mutated genes varied substantially across tumor types and subtypes. Statistical analysis identified 77 significantly mutated genes including those encoding protein kinases, G-protein-coupled receptors, such as GRM8, BAI3, AGTRL1 and LPHN3, and other druggable targets. Integrated analysis of somatic mutations and copy number alterations identified a further 35 significantly altered genes including GNAS, suggesting an expanded role for Gα subunits in multiple cancer types. Furthermore, our experimental analyses demonstrate the functional roles of mutant GNAO1 - a Gα subunit, and mutant MAP2K4 - a member of JNK signaling pathway, in oncogenesis. Our study provides an overview of the mutational spectra across major human cancers and identifies several potential therapeutic targets.

Authors’ Affiliations

(1)
Department of Molecular Biology, Genentech Inc., 1 DNA Way
(2)
Department of Bioinformatics, Genentech Inc., 1 DNA Way

References

  1. Futreal PA, et al: A census of human cancer genes. Nat Rev Cancer. 2004, 4: 177-183. 10.1038/nrc1299.PubMedPubMed CentralView ArticleGoogle Scholar

Copyright

© Kan et al; licensee BioMed Central Ltd. 2010

This article is published under license to BioMed Central Ltd.

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