Tumor states | |||
---|---|---|---|
Tumor state | Tumor copy number | Allowable tumor-normal genotypes | Description |
1 | 0 | (-, AA), (-, AB), (-, BB) | Homozygous deletion |
2 | 1 | (A, AA), (A, AB), (B, AB), (B, BB) | Hemizygous deletion |
3 | 2 | (AAAA, AA), (AAAB, AB), (ABBB, AB), (BBBB, BB) | Normal |
4 | 3 | (AAA, AA), (AAB, AB), (ABB, AB), (BBB, BB) | Single copy duplication |
5 | 4 | (AAAA, AA), (AAAB, AB), (ABBB, AB), (BBBB, BB) | 4n monoallelic amplification |
6 | 4 | (AAAA, AA), (AABB, AB), (BBBB, BB) | 4n balanced amplification |
7 | 5 | (AAAAA, AA), (AAAAB, AB), (ABBBB, AB), (BBBBB, BB) | 5n monoallelic amplification |
8 | 5 | (AAAAA, AA), (AAABB, AB), (AABBB, AB), (BBBBB, BB) | 5n unbalanced amplification |
9 | 6 | (AAAAAA, AA), (AAAAAB, AB), (ABBBBB, AB), (BBBBBB, BB) | 6n unbalanced amplification |
10 | 6 | (AAAAAA, AA), (AAAABB, AB), (AABBBB, AB), (BBBBB, BB) | 6n unbalanced amplification |
11 | 6 | (AAAAAA, AA), (AAABBB, AB), (BBBBB, BB) | 6n unbalanced amplification |
12 | 2 | (AA, AA), (AA, AB), (BB, AB), (BB, BB) | 2n somatic LOH |
13 | 3 | (AAA, AA), (AAA, AB), (BBB, AB), (BBB, BB) | 3n somatic LOH |
14 | 4 | (AAAA, AA), (AAAA, AB), (BBBB, AB), (BBBB, BB) | 4n somatic LOH |
15 | 5 | (AAAAA, AA), (AAAAA, AB), (BBBBB, AB), (BBBBB, BB) | 5n somatic LOH |
16 | 6 | (AAAAAA, AA), (AAAAAA, AB), (BBBBBB, AB), (BBBBBB, BB) | 6n somatic LOH |
17 | 2 | (AA, AA), (BB, BB) | 2n germline LOH |
18 | 2 | (AAA, AA), (BBB, BB) | 3n germline LOH |
19 | 2 | (AAAA, AA), (BBBB, BB) | 4n germline LOH |
20 | 2 | (AAAAA, AA), (BBBBB, BB) | 5n germline LOH |
21 | 2 | (AAAAAA, AA), (BBBBBB, BB) | 6n germline LOH |