Table 1 Major lineage-specific gene family expansions leading to differences in the P. ultimum gene complement compared to Phytophthora
Biological process | Comparison to Phytophthora | Protein family expansions (number of genes in P. ultimum/Ph. ramorum) |
|---|---|---|
Proteolysis | Over-represented | HECT E3 ubiquitin ligase (56/28) |
| Â | Â | Subtilisin-related serine protease S8A (43/7) |
| Â | Â | Trypsin-related serine protease S1A (17/31) |
| Â | Â | Pepsin-related aspartyl protease A1 (25/15) |
| Â | Â | Metalloprotease M12 (12/3) |
Intracellular | Under-represented | PTHR23257 S/T protein kinase (78/158) |
signaling cascade | Â | PTHR22985 S/T protein kinase (23/51) |
| Â | Â | PTHR22982, CaM kinase (50/85) |
| Â | Â | Phospholipase D (9/18) |
Sulfur metabolism | Under-represented | Sulfatase (7/14) |
| Â | Â | Cysteine desulfurylase (4/11) |
| Â | Â | Sulfate transporter (10/18) |
Water transport | Under-represented | Aquaporin (11/35) |