Genomic and small RNA sequencing of Miscanthus × giganteusshows the utility of sorghum as a reference genome sequence for Andropogoneae grasses

Table 1 The ten most abundant repetitive sequence clusters detected in the Miscanthus genome

Cluster ID	Cluster length (bp)	Estimated copy number in *Miscanthus*genome	Copy number in sorghum genome	Best match in GenBank nt	Best match in sorghum genome	Best match in Plant Repeat Database
137362	3,866	8.82 × 10³	2.15 × 10³	AC169373 Sorghum	Chromosome 2	AF137608 Sorghum bicolor centromere-associated repetitive DNA element CEN38
136340	1,441	1.97 × 10⁴	7.73 × 10³	No hits	Super contig 18	AY129008 Zea mays CRM centromeric retrotranposon
137115	2,512	1.02 × 10⁴	1.90 × 10³	No hits	Super contig 20	AY828019 Oryza sativa (japonica cultivar-group) clone CRR2_CH4-2 CRR2 retrotransposon
136416	1,855	1.32 × 10⁴	1.27 × 10³	No hits	Chromosome 10	AY129008 Zea mays CRM centromeric retrotranposon
137059	2,586	8.27 × 10³	2.05 × 10²	No hits	Chromosome 2	ZRSiTERTOOT00157 giepum_438D03-1 giepum_Z438D03-1 Z438D03 retrotransposon
137200	3,655	5.61 × 10³	3.68 × 10²	No hits	Chromosome 9	SRSiTERTOOT00084 leviathan_98N8-1 leviathan_98N8-1 retrotransposon
137015	2,882	6.83 × 10³	7.5 × 10¹	No hits	Chromosome 7	AF078902.1 Sorghum bicolor centromere element pHind12
137326	3,527	5.56 × 10³	3.30 × 10²	AF11417 Sorghum	Chromosome 2	AZ922428 MRCot4C10 Sorghum bicolor MRCot Sorghum bicolor genomic similar to Sorghum bicolor centromere element pHind12
137201	3,647	5.28 × 10³	2.16 × 10²	No hits	Chromosome 10	ZRSiTERTOOT00156 giepum_333J11-1hdnm giepum_Z333J11-1hdnm Z333J11 retrotransposon
135786	2,456	7.82 × 10³	1.89 × 10²	No hits	Chromosome 4	ORSiTERTOOT00275 osr10 retrotransposon

ISSN: 1474-760X