Figure 3
From: ArchAlign: coordinate-free chromatin alignment reveals novel architectures
ArchAlign uncovers an asymmetric nucleosome pattern at CTCF sites. (a) Nucleosome occupancy profiles were examined at a resolution of 10 bp centered on 1,000 CTCF binding sites in CD4+ cells, and were aligned with ArchAlign with a 1.5-kb alignment frame with reversal of regions enabled [30, 37]. (b) Comparison of the nucleosome profiles before (blue) and after alignment with ArchAlign (red).