Diameter (%) | Sig. modules (%) | Overlap (% of diameter) | Excess % |
|---|
25 (0.4) | 1507.3 (24.8) | 1.2 (4.8) | 4.39 |
100 (1.6) | 1645.7 (27.0) | 10.6 (10.6) | 8.96 |
500 (8.2) | 3220.4 (52.9) | 88.0 (17.6) | 9.38 |
880 (14.5) | 3389.2 (55.7) | 215.6 (24.5) | 10.03 |
1314 (21.6) | 3625.3 (59.6) | 408.6 (31.1) | 9.49 |
2500 (41.1) | 3972.1 (65.3) | 1207.5 (48.3) | 7.20 |
- A module is defined for every gene as the set of its k top correlating genes by Pearson correlation of temporal expression profiles, where k is the diameter, shown as number of genes and as genome-wide proportion (of 6,082 genes). Sig. modules reports the number and percentage of significant gene modules (P < 1/250) averaged over all pairs of strains. Overlap reports the number of genes overlapping for a given module between a pair of strains, at the specified diameter k, averaged over all significant modules and all pairs of strains. This is also shown in parentheses as a percentage of diameter. Excess shows the excess percentage of overlap compared to random expectation using binomial sampling. The excess percentage averaged over all k is 8.24%.
