From: Gene networks in Drosophila melanogaster: integrating experimental data to predict gene function
Source | Dataset | Pass filter? | Genes | Relationships |
---|---|---|---|---|
Genetic interactions | Â | Â | Â | Â |
   FlyBase | All reported GIs | N/A | 2,878 | 6,941 |
Protein-protein interactions | Â | Â | Â | Â |
   BIND, DIP, IntAct | Direct assay | N/A | 935 | 1,234 |
   DroID, BioGRID | High-confidence Y2H | N/A | 4,543 | 4,590 |
 | Positive Y2H | N/A | 6,183 | 19,584 |
Microarray | Â | Â | Â | Â |
   Hooper et al. [100] | All conditions | Yes | 10,460 | 3,289,275 |
   Chintapalli et al. [102] | All conditions | Yes | 10,054 | 3,618,216 |
   Parisi et al. [92] | All conditions | Yes | 9,922 | 5,656,854 |
   Edwards et al. [99] | Line1 | Yes | 8,403 | 8,072,394 |
 | Line2 | Yes | 8,296 | 8,118,665 |
 | All conditions | Yes | 0 | 0 |
   Altenhein et al. [98] | All conditions | Yes | 8,341 | 1,030,457 |
 | Gof | No | 0 | 0 |
 | Lof | No | 0 | 0 |
   Hild et al. [97] | All conditions | Yes | 8,214 | 677,746 |
   Qin et al. [94] | All conditions | Yes | 6,734 | 4,187,496 |
   Tomancak et al. [103] | All conditions | Yes | 6,288 | 2,626,310 |
   Magalhaes et al. [59] | All conditions | Yes | 5,718 | 1,102,629 |
   De Gregorio et al. [57] | All conditions | Yes | 5,698 | 1,561,265 |
 | Bacteria | Yes | 4,920 | 237,361 |
 | Fungus | No | 0 | 0 |
 | Spaetzle | No | 0 | 0 |
 | Relish | No | 0 | 0 |
 | Spaetzle &relish | No | 0 | 0 |
   Sandmann et al. [101] | All conditions | Yes | 5,474 | 1,238,924 |
   Arbeitman et al. [61] | All conditions | Yes | 4,354 | 1,769,479 |
 | Embryo | Yes | 4,126 | 1,271,286 |
 | Larva | No | 0 | 0 |
 | Pupal | No | 0 | 0 |
 | Adult male | No | 0 | 0 |
 | Adult female | No | 0 | 0 |
   Sorensen et al. [96] | Heat | Yes | 4,219 | 690,181 |
 | No heat | Yes | 4,083 | 701,546 |
 | All conditions | Yes | 0 | 0 |
   Beckstead et al. [95] | Third instar | Yes | 4,015 | 1,000,994 |
   Estrada et al. [93] | All conditions | Yes | 2,978 | 657,929 |
   Wertheim et al. [58] | All conditions | Yes | 2,280 | 551,684 |
   Beckstead et al. [95] | Ecr | No | 0 | 0 |
   Li et al. [91] | All conditions | No | 0 | 0 |