Table 3 Full-length L1Hs subfamily elements identified through 5' expression tag analysis
From: Many LINE1 elements contribute to the transcriptome of human somatic cells
Chromosome band | Genome coordinates (hg18) | ORF1, ORF2 | dbRIP ID [16] | Position of 5' tag start relative L1 5; end (nt) | Tag count |
|---|---|---|---|---|---|
1q31.3 | chr1:194455124-194461155 | Yes, - | Â | -380 | 3 |
2q12.1 | chr2: 102549247-102555276 | Yes, Yes | Â | -1 | 1 |
2q24.1 | chr2:158131112-158137135 | -, - | Â | -77 | 9 |
2q37.1 | chr2:232722151-232728183 | Yes, - | Â | -456 | 1 |
3p24.3 | chr3:18946979-18953016 | -. - | Â | +42 | 1 |
3q25.32 | chr3:159220160-159226187 | Yes, - | Â | 0 | 2 |
4q21.21 | chr4:79245914-79251943 | Yes, - | Â | -2 | 6 |
5q14.1 | chr5:79110459-79116517 | Yes, Yes | * | -59 | 1 |
5q14.3 | chr5:85842264-85848292 | Yes, Yes | Â | -364 | 1 |
6q14.2 | chr6:84100391-84106433 | -, Yes | Â | -4 | 4 |
7q35 | chr7:147170579-147176648 | -, - | Â | -322 | 6 |
8q24.13 | chr8:126664313-126670315 | Yes, Yes | 238261 | -3 | 5 |
10q25.1 | chr10:107127095-107133125 | -, Yes | Â | +50 | 8 |
11q14.3 | chr11:90339088-90345118 | -, - | Â | +44 | 4 |
11q21 | chr11:92509453-92515487 | Yes, Yes | Â | -394 | 2 |
11q22.3 | chr11:108553432-108559463 | Yes, Yes | Â | +50 | 1 |
12q24.32 | chr12:125349470-125355537 | Yes, Yes | * | -340 | 5 |
13q12.3 | chr13:29113844-29119843 | Yes, Yes | L1HS235| Database39 | -1 | 1 |
14q12 | chr14:30223767-30229794 | Yes, - | Â | +67 | 1 |
14q22.1 | chr14:51331070-51337100 | Yes, - | Â | -392 | 1 |
15q25.2 | chr15:81910561-81916590 | Yes, - | Â | -7 | 1 |
16q21 | chr16:64281416-64287424 | Yes, - | Â | -119 | 2 |
18p11.21 | chr18:13965860-13971890 | -, Yes | Â | -2 | 4 |
20q13.2 | chr20:53868030-53874021 | Yes, - | 237994 | -474 | 2 |