Table 3 Accuracy of model predictions before and after optimization
From: iBsu1103: a new genome-scale metabolic model of Bacillus subtilisbased on SEED annotations
Data type | Experimental data | Core iBsu1103 (correct/total) | Fit iBsu1103 (correct/total) | Oh et al. model (correct/total) |
|---|---|---|---|---|
Biolog media with nonzero growth | 184 [7] | 107/184 (58.2%) | 137/184 (74.5%) | 122/184 (66.3%) |
Biolog media with zero growth | 87 [7] | 80/87 (92%) | 81/87 (93.1%) | 79/87 (90.8%) |
Essential genes in LB media | 271 [3] | 187/215 (87%) | 192/215 (89.3%) | 63/91 (69.2%) |
Nonessential genes in LB media | 3,841 [3] | 862/889 (97%) | 872/888 (98.2%) | 657/675 (97.3%) |
Nonessential intervals in LB media | 63 [4] | 55/63 (87.3%) | 58/63 (92.1%) | 58/63 (92.1%) |
Nonessential intervals in minimal media | 54 [4] | 48/54 (88.9%) | 49/54 (90.7%) | 50/54 (92.6%) |
Essential gene intervals in minimal media | 9 [4] | 5/9 (55.6%) | 5/9 (55.6%) | 6/9 (66.7%) |
Overall accuracy | 4,452 | 1,344/1,501 (89.5%) | 1,398/1,500 (93.2%) | 1,035/1,163 (89.0%) |