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Table 1 List of genes used in this study

From: Identification and functional characterization of cis-regulatory elements in the apicomplexan parasite Toxoplasma gondii

Symbol

Gene name

Ortholog

ToxoDB ID

Promoter length (bp)

Gylcolysis

    

   HK

Hexokinase

+

57.m00001

900

   G6PI

Glucose-6-phosphate-isomerase

+

76.m00001

2,000

   PFK

Phosphofructokinase

 

49.m03242

2,000

   ALD

Aldolase

+

46.m00002

1,370

   TPI

Triose-phosphate-isomerase

+

42.m00050

2,000

   GAPDH

Glyceraldehydye-3-phosphate dehydrogenase

+

80.m00003

2,000

   PGK

Phosphoglycerate kinase

 

641.m000193

2,000

   PGM

Phosphoglucomutase

 

113.m00016

1,500

   ENO

Enolase*

+

59.m03410

2,000

   PyK

Pyruvate kinase

 

55.m00007

1,500

Nucleotide metabolism

    

   AK

Adenosine kinase

+

50.m00018

2,000

   CTPS

Cytidine synthase

+

129.m00261

2,000

   DCDA

Deoxycytidine deaminase

+

8.m00191

2,000

   DHFR-TS

Dihydrofolate reducatase-thymidine synthase

 

50.m00016

2,000

   GMPS

Guanidine monophosphate synthase

+

44.m00023

2,000

   RDPR

Ribonucelotide diphosphate reductase

 

83.m00003

2,000

   UPRT

Uracil phosphoribosyl transferase*

 

583.m00018

2,000

   AT

Adenosine transporter

 

49.m00004

2,000

Micronemal proteins

    

   MIC1

Microneme 1

+

80.m00012

1,500

   MIC2

Microneme 2

+

20.m00002

2,000

   MIC3

Microneme 3

 

641.m00002

2,000

   MIC4

Microneme 4

+

25.m00006

2,000

   MIC5

Microneme 5

+

65.m00002

2,000

   MIC6

Microneme 6

+

38.m00003

2,000

   MIC7

Microneme 7

 

55.m00014

2,000

   MIC8

Microneme 8*

 

50.m00002

2,000

   MIC9

Microneme 9

 

49.m03396

2,000

   MIC10

Microneme 10

+

50.m00010

2,000

   MIC11

Microneme 11

 

20.m05914

2,000

   M2AP

Microneme-2-associated protein

 

33.m00006

2,000

Ribosomal proteins

    

   RPS29

Ribosomal protein S29

 

49.m03285

800

   RPS38

Ribosomal protein S38

 

44.m04616

1,000

   RPS3

Ribosomal protein S3

 

44.m04669

1,000

   RPS13

Ribosomal protein S13

 

59.m03516

1,000

   RPL9

Ribosomal protein L9*

 

76.m00009

1,200

   RPS25

Ribosomal protein S25

 

44.m00003

1,300

   RPS10

Ribosomal protein S10

 

64.m00338

700

   RPL25

Ribosomal protein L25

 

55.m00189

1,000

  1. The list of genes and the lengths of their upstream regions that were used in the studies to identify regulatory motifs. A plus sign in the Ortholog column indicates that a corresponding ortholog in E. tenella was obtained and added to the search. Representative genes used in mutagenesis and expression analyses are denoted by an asterisk.
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Genome Biology

ISSN: 1474-760X

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