A blind deconvolution approach to high-resolution mapping of transcription factor binding sites from ChIP-seq data

Table 3 Comparison of CSDeconv with "simplified" CSDeconv

DosR data		GABP data
Motif match for CSDeconv	Motif match for simplified CSDeconv	Motif match for CSDeconv	Motif match for simplified CSDeconv
88,125.5	88,124.5		60,209,242
434,926.5	434,925.5		60,209,279
665,861.5	665,860.5	60,209,300	60,209,299
	665,882.5	60,209,320	60,209,319
668,497.5	668,498.5		60,209,356
801,480.5			60,209,397
1,639,628	1,639,629	60,209,418	60,209,417
1,960,521	1,960,520	60,355,273	60,355,274
	1,960,542		60,355,294
1,960,625	1,960,624		60,355,314
1,965,472	1,965,473		60,355,334
1,965,512	1,965,513	60,355,374	60,355,375
	1,965,533		60,355,395
2,056,376	2,056,377		60,355,415
	2,056,410		60,355,435
	2,238,919	60,483,321	60,483,320
2,238,939	2,238,940		60,508,762
	2,256,475	60,508,861	60,508,862
2,256,497	2,256,498	60,589,062	60,589,061
2,279,006	2,279,007		60,589,119
	2,279,027		60,589,144
2,279,063	2,279,062		60,589,163
2,949,473	2,949,472		60,784,040
	2,949,496		60,784,108
2,953,075	2,953,074	60,784,168	60,784,167
	2,953,099		60,784,201
2,954,793			60,802,658
2,955,032	2,955,033		60,802,702
	2,955,099	60,802,724	60,802,725
2,955,477			60,802,741
3,492,093	3,492,094		60,802,761
3,496,452	3,496,453		60,802,785
	3,500,832		60,802,817
3,500,854	3,500,853		60,808,690
			60,808,717
		60,808,763
			60,808,770
			60,808,789
			60,808,815
		60,838,195	60,838,196
			60,846,664
			60,846,794
			60,857,070
		60,878,251	60,878,250
			60,878,292
			60,878,366
		60,878,387	60,878,388
			61,517,979
		61,518,050	61,518,051
		61,518,359
		61,741,682
			61,741,862
		61,741,895
			61,741,918

Locations of motif matches for CSDeconv and a simplified CSDeconv that uses motif finding instead of blind deconvolution are listed for both the DosR and GABP datasets. Offsets are observed in the matching sequences for the two methods owing to differing motifs found by the methods.

ISSN: 1474-760X