Table 5 KOG-assigned EST clusters predicted to be highly 1N-specific based on statistical comparison of libraries
Cluster ID | Number of 1N ESTs | P-value | Homolog ID | Homolog description | BLAST |
|---|---|---|---|---|---|
Amino acid transport and metabolism | Â | Â | Â | Â | Â |
   GS01965 | 6 | 7.8 × 10-3 | CDO_CAEBR | Cysteine dioxygenase | 8 × 10-19 |
   GS00820 | 7 | 3.9 × 10-3 | *Q8GYS4_ARATH | Putative uncharacterized protein | 5 × 10-11 |
Carbohydrate transport and metabolism | Â | Â | Â | Â | Â |
   GS01922 | 6 | 7.8 × 10-3 | AAPC_CENCI | Putative apospory-associated protein C | 2 × 10-25 |
Cell cycle control, cell division, chromosome partitioning | Â | Â | Â | Â | Â |
   GS00508 | 6 | 7.8 × 10-3 | †Cyclin_N | Cyclin, N-terminal domain | 1 × 10-09 |
Chromatin structure and dynamics | Â | Â | Â | Â | Â |
   GS09138 | 13 | 6.1 × 10-5 | H4_OLILU | Histone H4 | 1 × 10-38 |
Cytoskeleton | Â | Â | Â | Â | Â |
   GS00708 | 6 | 7.8 × 10-3 | DYI3_ANTCR | Dynein intermediate chain 3, ciliary | 6 × 10-62 |
Function unknown | Â | Â | Â | Â | Â |
   GS00091 | 6 | 7.8 × 10-3 | EMAL4_MOUSE | Echinoderm microtubule-associated protein-like 4 | 4 × 10-36 |
   GS02362 | 7 | 3.9 × 10-3 | *A8Q1G0_MALGO | Putative uncharacterized protein | 8 × 10-16 |
   GS00939 | 6 | 7.8 × 10-3 | * B8BBW9_ORYSI | Putative uncharacterized protein | 9 × 10-08 |
General function prediction only | Â | Â | Â | Â | Â |
   GS01285 | 6 | 7.8 × 10-3 | EHMT2_MOUSE | Histone-lysine N-methyltransferase | 3 × 10-13 |
   GS08284 | 8 | 2.0 × 10-3 | EI2B_AQUAE | Putative translation initiation factor eIF-2B | 4 × 10-27 |
   GS00938 | 7 | 3.9 × 10-3 | MORN3_HUMAN | MORN repeat-containing protein 3 | 4 × 10-18 |
   GS00985 | 6 | 7.8 × 10-3 | PTHD2_MOUSE | Patched domain-containing protein 2 | 2 × 10-08 |
Inorganic ion transport and metabolism | Â | Â | Â | Â | Â |
   GS01939 | 6 | 7.8 × 10-3 | AMT12_ARATH | Ammonium transporter 1 member 2 | 2 × 10-25 |
   GS02431 | 8 | 2.0 × 10-3 | RABL5_DANRE | Rab-like protein 5 | 3 × 10-28 |
   GS01141 | 6 | 7.8 × 10-3 | TM9S2_RAT | Transmembrane 9 superfamily member 2 | 7 × 10-84 |
   GS00197 | 6 | 7.8 × 10-3 | ARF1_SALBA | ADP-ribosylation factor 1 | 1 × 10-70 |
Nucleotide transport and metabolism | Â | Â | Â | Â | Â |
   GS00406 | 7 | 3.9 × 10-3 | NDK7_HUMAN | Nucleoside diphosphate kinase 7 | 2 × 10-32 |
Posttranslational modification, protein turnover, chaperones | Â | Â | Â | Â | Â |
   GS00465 | 6 | 7.8 × 10-3 | TRAP1_DICDI | TNF receptor-associated protein 1 homolog, mitochondrial precursor | 1 × 10-98 |
   GS04078 | 6 | 7.8 × 10-3 | BIRC7_HUMAN | Baculoviral IAP repeat-containing protein 7 | 2 × 10-06 |
   GS01693 | 6 | 7.8 × 10-3 | IQCAL_HUMAN | IQ and AAA domain-containing protein ENSP00000340148 | 3 × 10-41 |
   GS00324 | 8 | 2.0 × 10-3 | TTLL4_HUMAN | Tubulin polyglutamylase | 1 × 10-42 |
   GS06285 | 7 | 3.9 × 10-3 | IAP3_NPVOP | Apoptosis inhibitor 3 | 1 × 10-05 |
   GS03771 | 6 | 7.8 × 10-3 | 14335_ORYSJ | 14-3-3-like protein GF14-E | 1 × 10-34 |
   GS01424 | 6 | 7.8 × 10-3 | PCSK7_RAT | Proprotein convertase subtilisin/kexin type 7 precursor | 2 × 10-08 |
   GS01530 | 6 | 7.8 × 10-3 | YDM9_SCHPO | Uncharacterized RING finger protein C57A7.09 precursor | 3 × 10-07 |
   GS00537 | 7 | 3.9 × 10-3 | XRP2_XENLA | Protein XRP2 | 5 × 10-20 |
Signal transduction mechanisms | Â | Â | Â | Â | Â |
   GS01456 | 8 | 2.0 × 10-3 | CML12_ARATH | Calmodulin-like protein 12 | 3 × 10-11 |
   GS03471 | 6 | 7.8 × 10-3 | DNAL1_CHLRE | Flagellar outer arm dynein light chain 1 | 1 × 10-52 |
   GS00910 | 14 | 3.1 × 10-5 | KAPR2_DROME | amp-dependent protein kinase type II regulatory subunit | 2 × 10-08 |
   GS04612 | 6 | 7.8 × 10-3 | RHOM_DROME | Protein rhomboid | 3 × 10-08 |
   GS02444 | 11 | 2.4 × 10-4 | ANR11_HUMAN | Ankyrin repeat domain-containing protein 11 | 3 × 10-09 |
   GS02191 | 6 | 7.8 × 10-3 | LRC50_HUMAN | Leucine-rich repeat-containing protein 50 | 1 × 10-54 |
   GS00234 | 7 | 3.9 × 10-3 | KCC1A_RAT | Calcium/calmodulin-dependent protein kinase type 1 | 1 × 10-51 |
   GS00184 | 6 | 7.8 × 10-3 | TNI3K_RAT | Serine/threonine-protein kinase | 3 × 10-14 |
   GS01544 | 7 | 3.9 × 10-3 |  |  |  |
   GS03554 | 7 | 3.9 × 10-3 | †PH | Plecstrin homology domain | 3 × 10-09 |
Transcription | Â | Â | Â | Â | Â |
   GS00117 | 8 | 2.0 × 10-3 | MYB_DROME | Myb protein | 9 × 10-06 |
   GS00273 | 8 | 2.0 × 10-3 | MYB_CHICK | Myb proto-oncogene protein (C-myb) | 3 × 10-34 |
   GS01762 | 6 | 7.8 × 10-3 | MYBB_CHICK | Myb-related protein B | 5 × 10-06 |