Table 3 ALLPATHS, Velvet and EULER assemblies of five microbial genomes: genome coverage
From: ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads
| Â | ALLPATHS | Velvet | EULER |
|---|---|---|---|
Covered by contigs ≥1 kb |  |  |  |
   S. aureus | 99.1% | 97.0% | 96.7% |
   E. coli | 99.3% | 97.7% | 94.6% |
   R. sphaeroides | 98.5% | 94.3% | 65.0% |
   S. pombe | 95.9% | 95.5% | 93.6% |
   N. crassa | 89.5% | 88.7% | 89.2% |
Covered by contigs ≥10 kb |  |  |  |
   S. aureus | 98.8% | 94.4% | 93.0% |
   E. coli | 99.0% | 92.4% | 72.7% |
   R. sphaeroides | 96.0% | 87.2% | 6.2% |
   S. pombe | 91.3% | 91.3% | 76.3% |
   N. crassa | 71.0% | 62.1% | 61.5% |
Covered by contigs ≥100 kb |  |  |  |
   S. aureus | 88.3% | 36.5% | 41.3% |
   E. coli | 86.5% | 25.5% | 0.0% |
   R. sphaeroides | 69.5% | 58.4% | 0.0% |
   S. pombe | 18.3% | 17.8% | 1.7% |
   N. crassa | 1.3% | 0.3% | 0.0% |