From: Consistent probabilistic outputs for protein function prediction
Data type | Description | BP | CC | MF |
---|---|---|---|---|
Phenotype | Â | Â | Â | Â |
   MGI | Mammalian phenotype ontology terms (33) | 1,994 | 2,157 | 1,898 |
   OMIM | Diseases (2,488) associated with human homologs | 998 | 1,166 | 978 |
Phylogenetic profile | Â | Â | Â | Â |
   Inparanoid | Orthologs across 21 species | 6,131 | 7,092 | 6,556 |
   Biomart | Orthologs across 18 species | 6,269 | 7,242 | 6,695 |
Protein domain | Â | Â | Â | Â |
   Interpro | Functional sites and domains | 7,131 | 8,027 | 7,603 |
   PfamA | Protein domains | 6,790 | 7,648 | 7,239 |
Protein-protein interaction | Â | Â | Â | Â |
   PPI | Transferred via orthology from human (OPHID) | 3,273 | 3,690 | 3,509 |
Gene expression data | Â | Â | Â | Â |
   Su et al. [9] | Oligonucleotide arrays (55 tissues) | 6,555 | 7,587 | 7,029 |
   Zhang et al. [7] | Affymetrix arrays (61 tissues) | 5,097 | 5,716 | 5,447 |
   SAGE | Tag counts from SAGE library (99% cutoff) | 6,323 | 7,231 | 6,753 |
Total | Â | 7,968 | 9,005 | 8,427 |