From: Human-macaque comparisons illuminate variation in neutral substitution rates
 | Non-CpG sites | All sites | ||||||
---|---|---|---|---|---|---|---|---|
Predictors | t value* | Significance†| VIF‡ | Variability explained§ | t value* | Significance†| VIF‡ | Variability explained§ |
X chromosome/autosome indicator | 13.94 | <10-4 | 1.2 | 0.08 | 15.25 | <10-4 | 1.3 | 0.09 |
GC content | Â | Â | Â | Â | Â | Â | Â | Â |
   Linear term | -10.34 | <10-4 | 3.7 | 0.12 | -5.08 | <10-4 | 3.4 | 0.14 |
   Quadratic term | 15.85 | <10-4 | 1.3 |  | 18.78 | <10-4 | 1.2 |  |
Exon density | -7.03 | <10-4 | 2.4 | 0.02 | -9.37 | <10-4 | 2.4 | 0.03 |
SNP density | 6.25 | <10-4 | 1.2 | 0.02 | 6.85 | <10-4 | 1.2 | 0.02 |
Male recombination rate | 3.69 | 0.003 | 1.6 | 0.01 | 4.46 | <10-4 | 1.6 | 0.01 |
Female recombination rate | NS | NS | NS | NS | NS | NS | NS | NS |
Distance to telomere | Â | Â | Â | Â | Â | Â | Â | Â |
   Linear term | -12.33 | <10-4 | 2.5 | 0.06 | -16.78 | <10-4 | 2.5 | 0.11 |
   Quadratic term | 7.63 | <10-4 | 2.0 |  | 10.77 | <10-4 | 2.0 |  |
Mouse-rat orthologous neutral rate | 7.95 | <10-4 | 1.8 | 0.09 | 6.64 | <10-4 | 1.4 | 0.07 |
Dog-cow orthologous neutral rate | 10.56 | <10-4 | 1.3 | Â | 10.41 | <10-4 | 1.4 | Â |
Multiple R2 | Â | Â | Â | 0.52 | Â | Â | Â | 0.53 |
Adjusted R2 | Â | Â | Â | 0.52 | Â | Â | Â | 0.52 |