| OMAP SSR | japonica SSR | indica SSR | ||||||
---|---|---|---|---|---|---|---|---|---|
Repeat | No. | Average length | Standard deviation | No. | Average length | Standard deviation | No. | Average length | Standard deviation |
Di | 8,246 | 44.51 | 45.15 | 8,636 | 43.32 | 24.94 | 8,317 | 40.78 | 22.2 |
Tri | 4,541 | 28.75 | 13.61 | 6,259 | 29.26 | 17.59 | 6,059 | 28.89 | 15.71 |
Tetra | 1,844 | 27.69 | 12.69 | 2,439 | 34.25 | 28.81 | 2,285 | 29.9 | 16.51 |
Penta | 1,837 | 25.11 | 7.73 | 2,628 | 25.24 | 6.39 | 2,142 | 25.52 | 9 |
Hexa | 512 | 27.46 | 10.5 | 691 | 29.96 | 41.33 | 567 | 28.04 | 20.58 |
[C/G]A DNR* | 3,151 | 30.29 | 11.08 | 3,617 | 32.31 | 14.76 | 3,722 | 31.55 | 12.45 |
TA DNR* | 5,086 | 53.32 | 55 | 4,996 | 51.38 | 27.62 | 4,573 | 48.38 | 25.32 |
G/C rich TNR†| 2,442 | 24.56 | 4.51 | 4,673 | 24.85 | 5.59 | 4,448 | 24.79 | 5.56 |
A/T rich TNR†| 2,099 | 33.64 | 18.24 | 1,586 | 42.25 | 30.07 | 1,611 | 40.19 | 25.86 |