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Figure 1 | Genome Biology

Figure 1

From: Genome wide prediction of HNF4α functional binding sites by the use of local and global sequence context

Figure 1

Repeats in the structure of HNF4 binding sites (from TRANSFAC®). (a) Examples of multiple repeats forming canonical DR1 as well as DR2, inverted (IR) and 'everted' (ER) repeats. The centrally located black arrows, marked as DR1 or DR2, indicate the repeat with the maximal score (sum of the scores of single elements) as compared to the gray arrows representing multiple repeats. (b) Statistics of repeats of different types (direct repeats, DR0-4; everted repeats, ER0-4; inverted repeats, IR0-4) in the structure of HNF4 sites. Black bars show the observed number of repeats found in the structure of 73 sequences of known HNF4 binding sites (listed in Additional data file 1) considering one repeat with the maximal score per sequence. Gray bars show the total number of repeats found in this set of HNF4 sites.

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Genome Biology

ISSN: 1474-760X

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