Table 2 Transposable element content in neo-X and neo-Y chromosome contigs
From: Genomic degradation of a young Y chromosome in Drosophila miranda
Genomic region* | Retroelements | DNA transposons | % of total sequence | ||
|---|---|---|---|---|---|
| Â | Number | Length (bp) | Number | Length (bp) | Â |
neo-X linked | Â | Â | Â | Â | Â |
   Cyp6t3 | 7 | 931 | 1 | 252 | 0.62 |
   CG11228 | 12 | 6,153 | 0 | 0 | 2.88 |
   CG3167 | 5 | 722 | 2 | 291 | 0.51 |
   CG2269 | 12 | 1,114 | 1 | 372 | 0.68 |
   RnrS | 12 | 2,676 | 1 | 74 | 1.25 |
   dpld | 8 | 1,547 | 0 | 0 | 0.71 |
   CG3700 | 19 | 2,852 | 0 | 0 | 1.36 |
   Total | 75 | 15,995 | 5 | 989 | 1.16 |
neo-Y linked | Â | Â | Â | Â | Â |
   Cyp6t3 | 51 | 27,272 | 2 | 166 | 17.94 |
   CG11228 | 49 | 19,213 | 2 | 125 | 13.59 |
   CG3167 | 43 | 47,660 | 4 | 1,068 | 29.12 |
   CG2269 | 25 | 23,855 | 3 | 555 | 15.81 |
   RnrS | 50 | 27,792 | 5 | 1,015 | 17.35 |
   dpld | 59 | 28,969 | 10 | 2,337 | 21.76 |
   CG3700 | 65 | 41,649 | 4 | 12,119 | 23.79 |
   Total | 342 | 216,410 | 30 | 17,385 | 20.28 |